Home Integrations How to connect Atoa with your Shopify account

How to connect Atoa with your Shopify account

Last updated on Aug 05, 2025

Integrating Atoa with your Shopify store lets your customers pay you directly through their bank app, quickly, securely, and without card fees. Follow these steps to get set up.

Step 1: Begin the setup from Atoa

Go to Settings from the left-hand menu on your Atoa dashboard.

Click on the Integrations tab.

  • Under the Shopify option, click Set up now.

  • Then click Go to Shopify. This will take you to the Shopify App Store.

  • Click Install to add the Atoa Payments app to your Shopify store.

If you’re not already logged into your Shopify account, you’ll be prompted to sign in first.

Note: If you don’t have the Payouts feature enabled yet, you’ll see a Contact us button instead of Go to Shopify. Our team will get in touch and enable end-of-day Payouts for your account. Once that’s done, we’ll share the Shopify installation link with you.

Step 2: Complete the installation in Shopify

  • Once installed, you’ll be taken to your Shopify dashboard. A pop-up will appear asking you to install the Atoa Payments app. Click Install.

  • The app will now appear under Apps and sales channels in your Shopify dashboard.

Step 3: Connect Atoa with Shopify

  • You’ll be redirected back to your Atoa dashboard, where a pop-up will appear. Tick the consent box and click I understand to authorise the connection.

  • If you manage multiple Shopify stores, you’ll be asked to choose which one to connect.

Step 4: Activate Atoa Payments in Shopify

  • You’ll be redirected again to Shopify, specifically to the Atoa Payments section under Payments.

  • Click Activate to complete the setup.

  • Atoa Payments will now appear under Supported Payment Methods in your Shopify Payments settings.

That’s it! Your customers will now be able to pay using open banking through Atoa. At checkout, they’ll see a QR code which they can scan to complete the payment using their banking app.

How to check if I’ve received a Shopify payment?

  • Click on the notifications bell icon on the top right of your Atoa dashboard, or

  • Go to Payments from the left-hand menu. Look for transactions labelled Shopify under the Source column.

  • Click on the transaction to view full payment details.

How do I issue a refund?

  • In your Atoa dashboard, go to Payments and click on the relevant transaction. Then click on either the Payment ID or the Refund button.

  • This will take you to your Shopify Orders page.

  • Select the order and click Refund at the top of the page. Choose the items to refund and click the final Refund button on the right to confirm.

  • The refund timeline will appear below, and the status will update in both Shopify and your Atoa dashboard.

How do I disconnect Atoa from Shopify?

  • In the Atoa dashboard, go to Settings > Integrations.

  • Under Shopify, click Manage, then click Disconnect.

  • Confirm the disconnection by clicking Disconnect again on the pop-up.